ImageJ
Image processing for biology. Paper about ImageJ
Cell Profiler
High content cell morpology phenotyping. Paper about Cell Profiler
Illastic
Interactive image classification, segmentation and analysis.Paper about Illastic
Imaris
Data management, visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets. Paper about Imaris
Cell Missy
Data management system for cell migration data (focus on wound healing). Paper about Cell Missy
ClearVolume
Visualization of 3D data during imaging. Paper about ClearVolume
DeBias
Analysis of co-localization / co-alignment. Paper about DeBias
Amira
Imaging platform for visualizing and manipulating of 3D data. Paper about Amira
UTrack
Particle tracking. Paper about UTrack
TFM
MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads. Paper about TFM